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Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing.

Identifieur interne : 000235 ( Main/Exploration ); précédent : 000234; suivant : 000236

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing.

Auteurs : Sean P. Gordon [États-Unis] ; Elizabeth Tseng [États-Unis] ; Asaf Salamov [États-Unis] ; Jiwei Zhang [États-Unis] ; Xiandong Meng [États-Unis] ; Zhiying Zhao [États-Unis] ; Dongwan Kang [États-Unis] ; Jason Underwood [États-Unis] ; Igor V. Grigoriev [États-Unis] ; Melania Figueroa [États-Unis] ; Jonathan S. Schilling [États-Unis] ; Feng Chen [États-Unis] ; Zhong Wang [États-Unis]

Source :

RBID : pubmed:26177194

Descripteurs français

English descriptors

Abstract

Genes in prokaryotic genomes are often arranged into clusters and co-transcribed into polycistronic RNAs. Isolated examples of polycistronic RNAs were also reported in some higher eukaryotes but their presence was generally considered rare. Here we developed a long-read sequencing strategy to identify polycistronic transcripts in several mushroom forming fungal species including Plicaturopsis crispa, Phanerochaete chrysosporium, Trametes versicolor, and Gloeophyllum trabeum. We found genome-wide prevalence of polycistronic transcription in these Agaricomycetes, involving up to 8% of the transcribed genes. Unlike polycistronic mRNAs in prokaryotes, these co-transcribed genes are also independently transcribed. We show that polycistronic transcription may interfere with expression of the downstream tandem gene. Further comparative genomic analysis indicates that polycistronic transcription is conserved among a wide range of mushroom forming fungi. In summary, our study revealed, for the first time, the genome prevalence of polycistronic transcription in a phylogenetic range of higher fungi. Furthermore, we systematically show that our long-read sequencing approach and combined bioinformatics pipeline is a generic powerful tool for precise characterization of complex transcriptomes that enables identification of mRNA isoforms not recovered via short-read assembly.

DOI: 10.1371/journal.pone.0132628
PubMed: 26177194
PubMed Central: PMC4503453


Affiliations:


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Le document en format XML

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<AbstractText>Genes in prokaryotic genomes are often arranged into clusters and co-transcribed into polycistronic RNAs. Isolated examples of polycistronic RNAs were also reported in some higher eukaryotes but their presence was generally considered rare. Here we developed a long-read sequencing strategy to identify polycistronic transcripts in several mushroom forming fungal species including Plicaturopsis crispa, Phanerochaete chrysosporium, Trametes versicolor, and Gloeophyllum trabeum. We found genome-wide prevalence of polycistronic transcription in these Agaricomycetes, involving up to 8% of the transcribed genes. Unlike polycistronic mRNAs in prokaryotes, these co-transcribed genes are also independently transcribed. We show that polycistronic transcription may interfere with expression of the downstream tandem gene. Further comparative genomic analysis indicates that polycistronic transcription is conserved among a wide range of mushroom forming fungi. In summary, our study revealed, for the first time, the genome prevalence of polycistronic transcription in a phylogenetic range of higher fungi. Furthermore, we systematically show that our long-read sequencing approach and combined bioinformatics pipeline is a generic powerful tool for precise characterization of complex transcriptomes that enables identification of mRNA isoforms not recovered via short-read assembly. </AbstractText>
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